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Difference between Non Linear Editing System & After Effects :-

• After Effects and NLEs is that After Effects is layer-oriented, and NLEs are generally track-oriented.
  
• After Effects, each individual media object (video clip, audio clip, still image, etc.) occupies its own track. However, NLEs use a system where individual media objects can occupy the same track as long as they do not overlap in time.
  
• Track-oriented system is more suited for editing and can keep project files much more concise. The layer-oriented system that After Effects adopts is suited for extensive effects work and keyframing